CCL4L1

Protein-coding gene in the species Homo sapiens
CCL4L2
Identifiers
AliasesCCL4L2, AT744.2, CCL4L, SCYA4L, SCYQ4L2, C-C motif chemokine ligand 4 like 2
External IDsOMIM: 610757; MGI: 98261; GeneCards: CCL4L2; OMA:CCL4L2 - orthologs
Gene location (Human)
Chromosome 17 (human)
Chr.Chromosome 17 (human)[1]
Chromosome 17 (human)
Genomic location for CCL4L2
Genomic location for CCL4L2
Band17q12Start36,210,924 bp[1]
End36,212,878 bp[1]
Gene location (Mouse)
Chromosome 11 (mouse)
Chr.Chromosome 11 (mouse)[2]
Chromosome 11 (mouse)
Genomic location for CCL4L2
Genomic location for CCL4L2
Band11 C|11 51.09 cMStart83,553,410 bp[2]
End83,555,509 bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • bone marrow

  • testicle

  • gallbladder

  • bone marrow cells

  • appendix

  • granulocyte

  • spleen

  • lymph node

  • blood

  • placenta
Top expressed in
  • granulocyte

  • urethra

  • female urethra

  • male urethra

  • medial ganglionic eminence

  • stroma of bone marrow

  • blood

  • spermatid

  • right kidney

  • thymus
More reference expression data
BioGPS
n/a
Gene ontology
Molecular function
  • chemokine activity
  • cytokine activity
  • protein binding
  • CCR chemokine receptor binding
Cellular component
  • extracellular region
  • extracellular space
Biological process
  • lymphocyte chemotaxis
  • chemokine-mediated signaling pathway
  • cellular response to tumor necrosis factor
  • G protein-coupled receptor signaling pathway
  • positive regulation of GTPase activity
  • chemotaxis
  • inflammatory response
  • cellular response to interleukin-1
  • monocyte chemotaxis
  • neutrophil chemotaxis
  • immune response
  • positive regulation of ERK1 and ERK2 cascade
  • cellular response to interferon-gamma
  • regulation of signaling receptor activity
  • eosinophil chemotaxis
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez

9560

20303

Ensembl

ENSG00000276070
ENSG00000275313
ENSG00000276125
ENSG00000282604

ENSMUSG00000018930

UniProt

Q8NHW4

P14097

RefSeq (mRNA)
NM_001001435
NM_001291468
NM_001291469
NM_001291470
NM_001291471

NM_001291472
NM_001291473
NM_001291474
NM_001291475

NM_013652

RefSeq (protein)

NP_996890

NP_038680

Location (UCSC)Chr 17: 36.21 – 36.21 MbChr 11: 83.55 – 83.56 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

C-C motif chemokine 4-like is a protein that in humans is encoded by the CCL4L1 gene.[5][6][7][8]

Function

This gene is one of several cytokine genes clustered on the q-arm of chromosome 17. Cytokines are a family of secreted proteins involved in immunoregulatory and inflammatory processes. This protein is similar to CCL4 which inhibits HIV entry by binding to the cellular receptor CCR5. The copy number of this gene varies among individuals; most individuals have 1-5 copies in the diploid genome, although rare individuals do not contain this gene at all. The human genome reference assembly contains two copies of this gene. This record represents the more centromeric gene.[8]

References

  1. ^ a b c ENSG00000275313, ENSG00000276125, ENSG00000282604 GRCh38: Ensembl release 89: ENSG00000276070, ENSG00000275313, ENSG00000276125, ENSG00000282604 – Ensembl, May 2017
  2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000018930 – Ensembl, May 2017
  3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ Naruse K, Ueno M, Satoh T, Nomiyama H, Tei H, Takeda M, Ledbetter DH, Coillie EV, Opdenakker G, Gunge N, Sakaki Y, Iio M, Miura R (Feb 1997). "A YAC contig of the human CC chemokine genes clustered on chromosome 17q11.2". Genomics. 34 (2): 236–40. doi:10.1006/geno.1996.0274. PMID 8661057.
  6. ^ Irving SG, Zipfel PF, Balke J, McBride OW, Morton CC, Burd PR, Siebenlist U, Kelly K (Jul 1990). "Two inflammatory mediator cytokine genes are closely linked and variably amplified on chromosome 17q". Nucleic Acids Res. 18 (11): 3261–70. doi:10.1093/nar/18.11.3261. PMC 330932. PMID 1972563.
  7. ^ Modi WS (Mar 2004). "CCL3L1 and CCL4L1 chemokine genes are located in a segmental duplication at chromosome 17q12". Genomics. 83 (4): 735–8. doi:10.1016/j.ygeno.2003.09.019. PMID 15028295.
  8. ^ a b "Entrez Gene: CCL4L1 chemokine (C-C motif) ligand 4-like 1". Retrieved 8 February 2013.

External links

Further reading

  • Menten P, Wuyts A, Van Damme J (2003). "Macrophage inflammatory protein-1". Cytokine Growth Factor Rev. 13 (6): 455–81. doi:10.1016/S1359-6101(02)00045-X. PMID 12401480.
  • Napolitano M, Modi WS, Cevario SJ, et al. (1991). "The gene encoding the Act-2 cytokine. Genomic structure, HTLV-I/Tax responsiveness of 5' upstream sequences, and chromosomal localization". J. Biol. Chem. 266 (26): 17531–6. doi:10.1016/S0021-9258(19)47404-8. PMID 1894635.
  • Baixeras E, Roman-Roman S, Jitsukawa S, et al. (1991). "Cloning and expression of a lymphocyte activation gene (LAG-1)". Mol. Immunol. 27 (11): 1091–102. doi:10.1016/0161-5890(90)90097-J. PMID 2247088.
  • Lipes MA, Napolitano M, Jeang KT, et al. (1989). "Identification, cloning, and characterization of an immune activation gene". Proc. Natl. Acad. Sci. U.S.A. 85 (24): 9704–8. doi:10.1073/pnas.85.24.9704. PMC 282843. PMID 2462251.
  • Brown KD, Zurawski SM, Mosmann TR, Zurawski G (1989). "A family of small inducible proteins secreted by leukocytes are members of a new superfamily that includes leukocyte and fibroblast-derived inflammatory agents, growth factors, and indicators of various activation processes". J. Immunol. 142 (2): 679–87. doi:10.4049/jimmunol.142.2.679. PMID 2521353.
  • Zipfel PF, Balke J, Irving SG, et al. (1989). "Mitogenic activation of human T cells induces two closely related genes which share structural similarities with a new family of secreted factors". J. Immunol. 142 (5): 1582–90. doi:10.4049/jimmunol.142.5.1582. PMID 2521882.
  • Chang HC, Reinherz EL (1989). "Isolation and characterization of a cDNA encoding a putative cytokine which is induced by stimulation via the CD2 structure on human T lymphocytes". Eur. J. Immunol. 19 (6): 1045–51. doi:10.1002/eji.1830190614. PMID 2568930. S2CID 35270650.
  • Miller MD, Hata S, De Waal Malefyt R, Krangel MS (1989). "A novel polypeptide secreted by activated human T lymphocytes". J. Immunol. 143 (9): 2907–16. doi:10.4049/jimmunol.143.9.2907. PMID 2809212.
  • Lodi PJ, Garrett DS, Kuszewski J, et al. (1994). "High-resolution solution structure of the beta chemokine hMIP-1 beta by multidimensional NMR". Science. 263 (5154): 1762–7. Bibcode:1994Sci...263.1762L. doi:10.1126/science.8134838. PMID 8134838.
  • Cocchi F, DeVico AL, Garzino-Demo A, et al. (1996). "Identification of RANTES, MIP-1 alpha, and MIP-1 beta as the major HIV-suppressive factors produced by CD8+ T cells". Science. 270 (5243): 1811–5. Bibcode:1995Sci...270.1811C. doi:10.1126/science.270.5243.1811. PMID 8525373. S2CID 84062618.
  • Bernardini G, Hedrick J, Sozzani S, et al. (1998). "Identification of the CC chemokines TARC and macrophage inflammatory protein-1 beta as novel functional ligands for the CCR8 receptor". Eur. J. Immunol. 28 (2): 582–8. doi:10.1002/(SICI)1521-4141(199802)28:02<582::AID-IMMU582>3.0.CO;2-A. PMID 9521068. S2CID 29458782.
  • Garlisi CG, Xiao H, Tian F, et al. (1999). "The assignment of chemokine-chemokine receptor pairs: TARC and MIP-1 beta are not ligands for human CC-chemokine receptor 8". Eur. J. Immunol. 29 (10): 3210–5. doi:10.1002/(SICI)1521-4141(199910)29:10<3210::AID-IMMU3210>3.0.CO;2-W. PMID 10540332. S2CID 5044232.
  • Modi WS, Bergeron J, Sanford M (2001). "The human MIP-1beta chemokine is encoded by two paralogous genes, ACT-2 and LAG-1". Immunogenetics. 53 (7): 543–9. doi:10.1007/s002510100366. PMID 11685466. S2CID 26940744.
  • Guan E, Wang J, Roderiquez G, Norcross MA (2002). "Natural truncation of the chemokine MIP-1 beta /CCL4 affects receptor specificity but not anti-HIV-1 activity". J. Biol. Chem. 277 (35): 32348–52. doi:10.1074/jbc.M203077200. PMID 12070155.
  • Townson JR, Barcellos LF, Nibbs RJ (2002). "Gene copy number regulates the production of the human chemokine CCL3-L1". Eur. J. Immunol. 32 (10): 3016–26. doi:10.1002/1521-4141(2002010)32:10<3016::AID-IMMU3016>3.0.CO;2-D. PMID 12355456.
  • Lu J, Honczarenko M, Sloan SR (2004). "Independent expression of the two paralogous CCL4 genes in monocytes and B lymphocytes". Immunogenetics. 55 (10): 706–11. doi:10.1007/s00251-003-0636-z. PMID 14673550. S2CID 22941034.
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